Update: Have performed surgery on the EBCM. The black gasket that seals the metal around the circuit board had at least four places where it had failed and disintegrated enough that moisture could have gotten in. I *poorly* added flux and resoldered all the big points on the board, some of them looked like they were missing a flake of solder on the tops, so those were probably what was failing. The board is covered in excess flux now around the solder points, and I may have used too much black RTV gasketmaker to reseal it, and I may have only waited an hour before reassembling and only about two hours before driving the vehicle ignoring the 24-hr cure time, but the truck runs without throwing any codes for the first 40 miles of testing. Usually it would go on after the first 5-10 miles, so I'm cautiously optimistic about the results. Additionally one of the valves and valve body was rusty, so I cleaned it up with rubbing alcohol and q-tips, and dried it all up before reassembling.
Removal and reassembly is not as gobsmacking as doing the intake manifold, but it was a pain in the rear without a lift and I was worried the ABS unit would fail and leave me stranded for work the next day. But it runs with no issues and the ABS work properly.
For those undertaking this project: Make sure you have a T20 Torx, there are a couple different sizes that look and feel exactly that size but they aren't the same and this is a blind removal/install so having the right size, and having it in a small bit that you can easily insert by hand, is key. I had a hard time reaching the four bolts and removed the entire ABS metal carrier from the frame to make it easier to access the bolts on frame side. The gasket on the plastic/resin board side can be removed from the channel with a tiny screwdriver - there is one screwdriver size that fits right in the channel.
Cost of sending in this unit for remanufacture is $150 plus shipping so this saved me at least that much. Let's hope this fixed the problem and doesn't resort to that.
Thank you all very much for your help, TJ Baker, MRRSM, Reprise.